LJK
(Laboratoire Jean Kuntzmann) Mistis team
/ Modelling and Inference of Complex and Structured Stochastic
Systems
Jean-Baptiste Durand
Email
:
Assistant Professor at Grenoble
INP (Grenoble Institute
of Technology)...
... and more specifically at the "École
Nationale Supérieure d'Informatique et de Mathématiques
Appliquées de Grenoble" Ensimag
(engineering school of applied mathematics and computer science)
Address:
Laboratoire Jean Kuntzmann
S40700 - 38058 Grenoble cedex 9, France (Post)
700 avenue centrale - 38400 Saint Martin d'Heres (to actually get there!)
+33 4 57 42 17 33
Short biography / Research topics
Jean-Baptiste Durand received the engineering
degree in applied mathematics and computer science from the
"Institut National Polytechnique de Grenoble" Grenoble
INP (Grenoble Institute of Technology) in 1999. He received
the Ph.D. degree in applied mathematics in 2003 from the University of Grenoble I
(France).
From 1999 to 2003, he worked on statistical modelling at the French
National Institute for Research in Computer Science and Control (Inria), as a member of the IS2 project (Statistical
Inference for Health and Industry). Then, he was a Postdoctoral
Research Fellow at AMAP "Plant
Modelling" mixed research unit, Montpellier (France), with a grant
from CIRAD.
Currently, he is a teaching assistant at Grenoble
INP, member of the Mistis team of
Laboratoire Jean
Kuntzmann. He is the head of the statistics and data science tracks of the international Master's programme MSIAM (Looking for a high-level postgraduate programme in Data Science or Statistics? Have a look and apply at http://msiam.imag.fr/).
He teaches at the "École Nationale Supérieure d'Informatique
et de Mathématiques Appliquées de Grenoble" Ensimag
(engineering school of applied mathematics and
computer science). Topics: fundamentals of statistics,
computational statistics.
He was delegated to Inria team Virtual Plants
(Inria Sophia) between September 2009 and August 2011. His research
interests include computational methods for hidden Markov models,
statistical analysis of tree-structured processes, discrete
multivariate distributions and applications to signal processing and
botany.
Plants are branching living organisms that develop throughout
their lifetimes. Organs are created by small embryogenetic
regions at the tip of each axis, called apical meristems.
In the above projects, we are interested in studying
plant apical meristem functioning and development. We believe
that a detailed analysis of apical meristem processes, based
on advanced mathematical and computational methods and tools,
will lead us to get a deeper and better understanding of plant
development.
Modèles à structure cachée : inférence,
estimation, sélection de modèles et applications (in French)
(Compressed
PDF) (Compressed
PS)
J.-B. Durand
Book
Data Science. Cours et exercices. M.-R. Amini, R. Blanch, M. Clausel, J.-B. Durand, E. Gaussier, J. Malick, C. Picard, V. Quéma et G. Quénot. Eyrolles (Éd.), 2018.
livre
Research papers
Ornamental plants architectural characteristics in relation to
visual sensory attributes: a new approach on the rose bush for
objective evaluation of the visual quality
M. Garbez, R. Symoneaux, É. Belin, Y. Caraglio, Y. Chéné, N. Donès, J.-B. Durand, G. Hunault, D. Relion, M. Sigogne, D. Rousseau and G. Galopin
( Compressed
PDF ) Eur. J. Hortic. Sci.
(2018).
Notice: this is an electronic version of an article published
in Eur. J. Hortic. Sci.,
vol. 83 (2018) n. 3, p. 187-201.
doi.org/10.17660/eJHS.2018/83.3.8 The
original version is available at ISHS
Predicting Flowering Behavior and Exploring Its Genetic Determinism in an Apple Multi-family Population Based on Statistical Indices and Simplified Phenotyping
J.-B. Durand, A. Allard, B. Guitton, E. Van de Weg, M. Bink and E. Costes
( Compressed
PDF ) ( Compressed
PDF of Supplementary material)
Notice: this is an electronic version of an article published
in Frontiers in Plant Science,07 June 2017
doi.org/10.3389/fpls.2017.00858
also available online at frontiers in Plant Science
The impact of long-term water stress on tree architecture and production is related to changes in transitions between vegetative and reproductive growth in the 'Granny Smith' apple cultivar
W. Yang, B. Pallas, J.-B. Durand, S. Martinez, M. Han and E. Costes
( Compressed
PDF ) Tree Physiology
(2016).
Notice: this is an electronic version of an article published
in Tree Physiology,
Oxford University Press (OUP): Policy B - Oxford Open Option B, vol. 36 (2016) n. 11, p. 1369-1381 -
doi:10.1093/treephys/tpw068 The
original version is available at Oxford Academic
Localizing the latent structure
canonical uncertainty: entropy profiles for hidden Markov
models
J.-B. Durand and Y. Guédon
( Compressed
PDF ) Statistics and Computing
(2016).
Notice: this is an electronic version of an article published
in Statistics and Computing,
vol. 26 (2016) n. 1, p. 549-567 -
doi:10.1007/s11222-014-9494-9 The
original version is available at www.springer.com
New insights for estimating the genetic
value of segregating apple progenies for irregular bearing
during the first years of tree production
J.-B. Durand, B. Guitton; J. Peyhardi; Y.
Holtz; Y. Guédon; C. Trottier; E. Costes
( Compressed
PDF ) ( Compressed
PDF of Supplementary material) Journal of Experimental Botany
(2013).
Notice: This is a pre-copyedited, author-produced PDF of an
article accepted for publication in the Journal of Experimental Botany
following peer review. The version of record J.-B. Durand, B. Guitton; J.
Peyhardi; Y. Holtz; Y. Guédon; C. Trottier; E. Costes. New
insights for estimating the genetic value of segregating apple
progenies for irregular bearing during the first years of tree
production. Journal of Experimental Botany, vol. 64
(2013), p. 5099-5113 - doi:10.1093/jxb/ert297 is
available online at: jxb.oxfordjournals.org
Optimization of power consumption and
device availability based on point process modelling of the
request sequence
J.-B. Durand, S. Girard, V. Ciriza, L.
Donini
( Compressed
PDF ) Journal of the Royal
Statistical Society Series C (2013).
Notice: this is an electronic version of an article
published in the Journal
of the Royal Statistical Society Series C, vol. 62 (2013) n. 2, p.
151-162 - doi:10.1111/j.1467-9876.2012.01053.x The
original version is available at onlinelibrary.wiley.com
Characteristics of Acacia mangium shoot
apical meristems in natural and in vitro conditions in
relation to heteroblasty
C. Hatt, F. Mankessi, J.-B. Durand, F.
Boudon, F. Montes, M. Lartaud, J.-L. Verdeil, O. Monteeuis
( Compressed
PDF ) Trees - Structure and
Function (2012).
Notice: this is an electronic version of an article
published in Trees -
Structure and Function, vol. 26 (2012) n. 3, p.
1031-1044 - doi:10.1007/s00468-012-0680-0 The
original version is available at www.springerlink.com
In this article, a
permutation test is proposed to achieve multivariate
analysis of variance (MANOVA) in the setting of
non-Gaussian multivariate distributions.
Selecting Hidden Markov Model State
Number with Cross-Validated Likelihood
G. Celeux, J.-B. Durand
( Compressed
PDF ) ( Compressed
PS ) Computational Statistics
(2008).
Notice: this is an electronic version of an article
published in Computational
Statistics, vol. 23 (2008) n. 4 (October), p.
541-564 - doi: 10.1007/s00180-007-0097-1 The
original version is available at www.springerlink.com
Analysis of the Plant Architecture
via Tree-structured Statistical Models: the Hidden Markov
Tree Models
( Compressed
PDF )
J.-B. Durand, Y. Guédon, Y. Caraglio
and E. Costes New Phytologist
(2005).
Notice: this is an electronic version of an article
published in New
Phytologist, vol. 166 (2005) n. 3 (June), p.
813-825 - doi: 10.1111/ j.1469-8137.2005.01405.x Online
version
of
the
article
on
Blackwell
Publishing
website
Analyse de courbes de consommation
électrique par chaînes de Markov cachées
Analysis of electric consumption curves using hidden
Markov chains (in French)
( Compressed
PDF )
J.-B. Durand, L. Bozzi, G. Celeux and C. Derquenne Revue de Statistique
Appliquée, vol. LII (2004) no. 4, p. 71-91
Computational Methods for Hidden
Markov Trees - An Application to Wavelet Trees
( Compressed
PDF ) ( PDF
)
J.-B. Durand, P. Gonçalvès and Y. Guédon IEEE Transactions on Signal Processing
vol. 52 (2004) n. 9 (sep), p. 2551-2560
Research reports
Localizing the Latent Structure
Canonical Uncertainty: Entropy Profiles for Hidden Markov
Models
( Compressed
postscript ) ( PDF
File ) ( Inria RR )
J.-B. Durand and Y. Guédon Inria research
report no. 7896, February 2012
Selecting Hidden Markov Chain States
Number with Cross-Validated Likelihood
( Compressed
postscript ) ( PDF
File ) ( Inria RR )
G. Celeux and J.-B. Durand Inria research
report no. 5877, April 2006
Analyse de courbes de consommation
électrique par chaines de Markov cachées (in French)
Analysis of electric consumption curves using hidden
Markov chains
( Compressed
postscript ) ( PDF
File ) ( Inria RR )
J.-B. Durand, L. Bozzi, G. Celeux and C. Derquenne Inria research
report no. 4858, June 2003
Software Reliability Modelling and
Prediction with Hidden Markov Chain
( Compressed
postscript ) ( PDF
File ) ( Inria RR )
J.-B. Durand and O. Gaudoin Inriareseach
report no. 4747, February 2003
Statistical Inference for Hidden
Markov Trees and Application to Wavelet Trees
( Compressed
postscript ) ( PDF
File ) ( Inria RR )
J.-B. Durand and P. Gonçalvès Inria reseach
report no. 4248, September 2001
Conference proceedings
Approximation of trees by self-nested trees (PDF)
R. Azaïs, J.-B. Durand and C. Godin Proceedings of the 21st Meeting on Algorithm Engineering and Experiments (ALENEX 2019),
Westin San Diego, USA, January 7-8 2019, pages 39-53
Eye-tracking data analysis using hidden semi-Markovian models to identify and characterize reading strategies. (txt)
B. Olivier, J.-B. Durand, A. Guérin-Dugué and M. Clausel. Proceedings of the 19th European Conference on Eye Movements (ECEM2017),
Wuppertal, Germany, August 20-24 2017
The Analysis of the Impact of Carbon Source-sink Relationships on Flowering Patterns Reveals
That Apple Tree Growth and Functioning are Determined by Mechanisms Occurring at
the Tree and Shoot Scales (Compressed
PDF of the presentation by B. Pallas)
B. Pallas, J. Ngao, J.-B. Durand, S. Martinez, S. Bluy, J.-J. Kelner and E. Costes Acta Horticulturae, Proceedings of the XI International Symposium on Integrating Canopy, Rootstock and Environmental Physiology in Orchard
Systems,
Bologna, Italy, August 28-September 2 2016
Characterization of mango tree patchiness using a tree-segmentation/clustering approach (Compressed
PDF)
P. Fernique, A. Dambreville, J.-B.
Durand, C. Pradal, P.-É. Lauri, F. Normand and Y. Guédon
Proceedings of the International Conference on Functional-Structural
Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA2016) (FSPMA2016),
Qingdao, China, November 7-11 2016, published by IEEE, pages 68-74
Lossy compression of unordered trees
(PDF
File of abstract)
R. Azaïs, J.-B. Durand and C. Godin DCC2016, Compression Conference, Snowbird (Utah), USA, March 29-April 1,
2016, published by IEEE, page 581
Quantifying and localizing state
uncertainty in hidden Markov models using conditional
entropy profiles
(PDF
File)
J.-B. Durand and Y. Guédon Compstat2014, Genève (Switzerland), August 19-22
2014, edited by M. Gilli, G. González-Rodríguez and A.
Nieto-Reyes, published by Université de Genève,
Switzerland.
pages 213-221, only online and on CD (ISBN
978-2-8399-1347-8).
Estimation of Discrete Partially
Directed Acyclic Graphical Models in Multitype Branching
Processes
(PDF
File)
P. Fernique, J.-B. Durand and Y.
Guédon Compstat2014, Genève (Switzerland), August 19-22
2014, edited by M. Gilli, G. González-Rodríguez and A.
Nieto-Reyes, published by Université de Genève,
Switzerland.
pages 579-586, only online and on CD (ISBN
978-2-8399-1347-8).
Deciphering mango tree asynchronisms
using Markov tree and probabilistic graphical models
(Compressed
PDF )
A. Dambreville, P. Fernique, C.
Pradal, P.-É. Lauri, F. Normand, Y. Guédon and J.-B.
Durand Proceedings
of the Seventh International Workshop on
Functional-Structural Plant Models (FSPM2013),
edited by Sievänen et al., published by the Finnish
Society of Forest Science, Vantaa, Finland, p. 210-212.
Saariselkä(Finland), June 9-14 2013
Estimating the genetic value of F1
apple progenies for irregular bearing during first years
of production
(Compressed
PDF )
J.-B. Durand, B. Guitton, J. Peyhardi,
Y. Holtz, Y. Guédon, C. Trottier and E. Costes Proceedings
of the Seventh International Workshop on
Functional-Structural Plant Models (FSPM2013),
edited by Sievänen et al., published by the Finnish
Society of Forest Science, Vantaa, Finland, p. 13-15.
Saariselkä(Finland), June 9-14 2013
Reconstructing Plant Architecture
from 3D Laser scanner data
(PDF
Poster)
C. Preuksakarn, F. Boudon, P. Ferraro,
J.-B. Durand, E. Nikinmaa and C. Godin Proceedings
of the Sixth International Workshop on
Functional-Structural Plant Models (FSPM10),
University of California, Davis (USA),
September 12-17 2010
Segmentation-based approaches for
characterising plant architecture and assessing its
plasticity at different scales
(PDF
Poster)
J.-B. Durand, Y. Caraglio, P. Heuret
and E. Nicolini Proceedings
of the Fifth International Workshop on
Functional-Structural Plant Models (FSPM07),
Napier (New-Zealand), November 4-9 2007
Exploring morphogenetical gradients
plasticity using hidden Markov tree models in young
individuals of the tropical specie Symphonia globulifera
(Clusiaceae).
(PDF
Poster)
P. Heuret J.-B. Durand, E. Nicolini,
S. Coste, Y. Caraglio Proceedings
of the Fifth International Workshop on
Functional-Structural Plant Models (FSPM07),
Napier (New-Zealand), November
4-9 2007
OpenAlea: An
open-software plateform for the integration of
heterogenous FSPM components S. Dufour-Kowalski, C.
Pradal, N. Dones, P. Barbier de Reuille, F. Boudon, J. Chopard, D.
DaSilva, J.B Durand, F. Theveny, P. Ferraro, C. Fournier, Y. Guedon,
C. Smith, S. Stoma, C. Godin, H. Sinoquet Proceedings
of the Fifth International Workshop on
Functional-Structural Plant Models (FSPM07),
Napier (New-Zealand),
November 4-9 2007
OpenAlea - A platform for plant
modelling, analysis and simulation
( PDF
File
)
C. Pradal, F. Boudon, N. Dones, J.-B. Durand, P. Barbier
De Reuille, C. Fournier, H. Sinoquet, C. Godin, Europython conference,
2006.
Analysis of the Plant Architecture
via Tree-structured Statistical Models: the Hidden Markov
Trees
( Compressed
PDF )
J.-B. Durand, Y. Guédon, Y. Caraglio and E. Costes Proceedings of the
Fourth International Workshop on Functional-Structural
Plant Models (FSPM04),
edited by Godin et al.,
published by UMR AMAP, p. 61-64. Montpellier (France),
June 7-11 2004
Software reliability modelling and
assessment with hidden Markov chains
J.-B. Durand and O. Gaudoin 4th International
Conference on Mathematical Methods in Reliability,
Santa-Fe (USA), June 2004. World Scientific Publishing,
Series on Quality, Reliability and Engineering Statistics.
Choosing the order of a hidden
Markov chain through cross-validated likelihood
( PDF
File )
G. Celeux and J.-B. Durand Compstat2002, Berlin (Germany), August 24-28
2002, edited by S. Klinke, P. Ahrend and
L. Richter, published by Humboldt-Universität zu
Berlin, Germany
2 pages, only online and on CD (ISBN 3-00-009819-4).
Meetings of the
French Statistical Society (Journées de Statistique -
usually in French)
Analyse de séquences oculométriques et d'électroencéphalogrammes par modèles markoviens cachés
d'arborescences
(
PDF File )
J.-B. Durand, A. Guérin-Dugué and S. Achard. 48èmes Journées de
Statistique, Montpellier (France), May 30-June 3 2016.
Détection de motifs disruptifs
au sein de plantes : une approche de quotientement/classification
d'arborescences
(
PDF File )
P. Fernique, J.-B. Durand and Y. Guédon 47èmes Journées de
Statistique, Lille (France), June 1-5 2015.
Quantification de l'incertitude sur
la structure latente dans des modèles de Markov cachés
(
PDF File )
J.-B. Durand and Y. Guédon 46èmes Journées de
Statistique, Rennes (France), June 2-6 2014.
Modèles graphiques paramétriques
pour la modélisation des lois de génération dans des
processus de branchement multitypes.
(
PDF File )
P. Fernique, J.-B. Durand and Y. Guédon 46èmes Journées de
Statistique, Rennes (France), June 2-6 2014.
A Statistical Model for Optimizing
Power Consumption of Printers
(PDF
Poster)
L. Donini, V. Ciriza, J.-B. Durand and
S. Girard 40èmes Journées de
Statistique, joint meeting with the Statistical Society
of Canada, Ottawa (Canada), June 2008.
Publications / communications
in educational journals / conferences (in French)
Data Science : une formation internationale de niveau Master en science des données
M.-R. Amini, J.-B. Durand, O. Gaudoin, E. Gaussier and A. Iouditski
( Compressed
PDF ) Statistique et Enseignement (ISSN 2108-6745), Société Française de Statistique, 2016, 7 (1), pp.95-102
+33 4 57 42 17 33